Abstract: On the base of defining the logistic base, four strategic goals of the management information system of a modern logistic base are brought forward. They are to protrude the centralizing effect of enterprises, improve the level of logistic services, optimize the deploying of logistic resources and respond immediately to the logistic demand of customers. The functions needed to the MIS to realize the strategic goals is deeply discussed, and a new system structure, including the decision and operation layers of informationwindows and the operation and application layers of enterprises, is put forward. At last, the structure of the management information system and the function design of the logistic public information window are deeply discussed.